Andy Wyenandt

This is an archive of Dr. Wyenandt's posts on the Plant and Pest Advisory.

Diagnosing Important Diseases In Tomato – Reference Guide

The following images consist of important diseases in tomato. These images can be used as a quick reference for diagnosing important fungal and bacterial pathogens. For best results, please turn your device (i.e., cell phone) sideways. For information on commercial control recommendations, please visit the tomato section of the 2022/2023 Mid-Atlantic Commercial Vegetable Production Guide. Additional information for home gardeners is located at the bottom of the Table.

Early blight Septoria leaf spot Anthracnose fruit rot
Early blight on tomato
Early blight lesion on fruit Ground rot infected green fruit Ground rot sporulating on fruit
Bacterial leaf spot Bacterial canker Bacterial speck
White mold Southern blight Late blight on foliage
White mold sclerotia in infected stem Southern blight sclerotia on infected stem Late blight infected fruit
Collar Rot caused by Alternaria spp.

For the homeowner or non-commercial grower there are a number of Rutgers/NJAES Fact Sheets available on-line:

Rutgers University/NJAES Fact Sheet (FS547) ‘Diagnosing and controlling important fungal pathogens of tomato in the home garden‘.

Rutgers University/NJAES Fact Sheet (FS548) ‘Diagnosing and controlling Phytophthora blight in the home garden’.

Rutgers University/NJAES Fact Sheet (FS1124) ‘Vegetable disease control recommendations for the home garden’.

For other Rutgers University/NJAES Fact Sheets for tomato please click here.

Diagnosing Southern Blight and White Mold in Tomato and Pepper

There have been a few reports of Southern blight (Sclerotinia rolfsii) and White mold (Sclerotinia sclerotiorum) on tomato and pepper in New Jersey. Southern blight is much more common in vegetable areas south of the state where summer temperatures remain hotter (above 90°F) for longer periods of time. Like white mold, it can survive in the soil for many years. Symptoms of Southern blight include infection at the base of the stem at the soil line. The resulting infection will girdle the plant causing wilt and death. The fungus will produce white, cottony mycelium and very small, spherical sclerotia which are often have a tannish, brown color.

White mold is more common than Southern blight in New Jersey, and like Southern blight, once introduced into a field or high tunnel it can very difficult to control. The pathogen produces large black sclerotia on the surface and inside infected stems. If sclerotia of either pathogen make their way back into the soil, both can survive for years causing significant problems.

All infected plants need to be removed immediately and disposed of properly to help reduce the chances of sclerotia returning to the soil.

For more information on chemical control please see the 2024/2025 Mid-Atlantic Commercial Vegetable Production Recommendations Guide.

Infected root

Symptoms of Southern blight on infected pepper plant. Note the numerous, small white to tan colored sclerotia on the stem.

Infected stem

White mold of tomato. Note the large black sclerotia developing inside the brittle stems.

Understanding and controlling Rhizoctonia root rot

Even though much of New Jersey has had wet weather recently, which is more favorable to Pythium and Phytophthora development, Rhizoctonia root rot has been reported over the past few weeks in a number of crops. Rhizoctonia root rot, caused by Rhizoctonia solani, is an important soil-borne fungal pathogen with a very large host range. The pathogen can survive saprophytically on living or dead plant material (organic matter) or as sclerotia in the soil (for more than 3 years). Disease development is favored by warm temperatures, dry (or very well drained) soils and stressed plants. Symptoms of Rhizoctonia root rot may begin as stunted plant growth (with poor root systems) with the appearance of brown lesions at the base of the stem causing wilting with lesions eventually girdling the stem and killing the infected plant. Rhizoctonia root rot infections only extend about an inch above the soil surface (Figure 1), unlike Phytophthora blight infection which can extend much farther up the stem. [Read more…]

Diagnosing Collar Rot and Alternaria Stem Rot of Tomato

Collar rot (Alternaria linariae) or Alternaria stem rot (Alternaria alternata f. sp. lycopersici) of tomato are common in young tomato plants. Either can be particularly troublesome in seedlings that have been held in transplant flats for an extended period of time before transplanting in hot, humid greenhouses. Collar rot infections often start where a leaflet branch has been broken or pruned which allows a point of infection. Symptoms of Alternaria stem rot include brown circular to irregular lesions on stems with definitive concentric black rings (very similar to Early blight on infected leaves). Symptoms of Collar rot are similar and may or may not produce concentric black rings. Infections that start in the greenhouse may lead to losses in the field as stems become girdled causing the plant or branches to wilt and die. Most commercial tomato varieties have resistance to Alternaria stem rot. While resistance is lacking to Collar rot, growers should chose varieties with Early blight resistance. Fungicides used to control Early blight are also effective against Collar rot.

Symptoms of Collar rot in young tomatoRotten stem

 

 

Theories on managing fungicide resistance development by tank mixing or rotating fungicides

The question of whether to tank mix high-risk (HR) fungicides with low-risk (LR) protectant fungicides or the rotation of HR fungicides with LR fungicides remains an open debate. The tank mixing or alternation of fungicides has been widely advocated as a means to delay or minimize the risks of resistance development (Genet et al., 2006; McGrath 2011; Van der Bosch and Gilligan, 2008; van den Bosch et al., 2014; Elderfield et al, 2018), although differences in opinion on whether one is better than the other exist (Genet et al., 2006), or that either method may be an effective means at reducing resistance development (van den Bosch and Gilligan, 2008). The theories behind the rotation or tank mixing of different fungicides follows strategies analogous with managing antibiotic resistance, using methods known as complementary therapy or cycling therapy (van den Bosch and Gilligan, 2008). Fungicide resistance studies with tank mixes or alternations use similar density-independent models as antibiotic resistance and assumes the sensitive and resistant strains to be at low initial densities. Resistance management studies incorporate what is often referred to as takeover time as the evaluation criterion (Van der Bosch and Gilligan, 2008). Take-over time is defined as the time-period in which the fraction of the resistant population passes a critical threshold level, thereby reducing the value of the fungicide for disease control (van den Bosch and Gilligan, 2008).

The concept behind the alternation of fungicides with different modes-of-action is that cyclic selection pressure placed on the fungus should help reduce the buildup of resistant populations, however, this idea has been criticized by numerous authors (van den Bosch and Gilligan, 2008). The argument against the alternation of fungicide chemistries is that this method would only work if it comes with a fitness cost (e.g., the ability to reproduce) associated with the resistant population in absence of selection pressure against the target fungicide (van den Bosch and Gilligan, 2008). Thus, without a fitness cost, the fraction of the resistant pathogen population would not change during the time period when the target fungicide is not used (van den Bosch and Gilligan, 2008). This suggests that resistance development would continue as if there had been no alternation at all, and it would take exactly the same number of fungicide applications of the target fungicide to build up a given level of resistance to that fungicide, although the time for resistance buildup (i.e., take-over time) would be potentially delayed (van den Bosch and Gilligan, 2008). Birch and Shaw (1997) state that one of the advantages to alternation is the possibility of stabilizing selection pressure, if only one of the fungicides were applied at a time.

The concepts behind the tank mixing of fungicides closely follows the concept behind the alternation of fungicides with different modes-of-action. Van den Bosch and Gilligan (2008) using density-dependent models, showed that if no fitness costs exist, mixtures are no different from alternation strategies when comparable doses are used. Tank mixes can be useful if fitness costs exist, but is questionable whether fitness costs would ever be large enough to make mixtures a useful resistance management strategy. Van den Bosch and Gilligan (2008) suggested that tank mixtures deserve attention for their ability to act as insurance in the sense that large scale losses could be avoided if one component of the tank mixture (i.e., the HR fungicide) suddenly fails, and that this is especially important in pathogens where large-scale epidemics (e.g., cucurbit downy mildew) may occur in one year, but not others. Van den Bosch et al. (2014) using empirical and theoretical modeling suggested the following conclusions with using mixtures as a fungicide resistance tactic: 1) adding a multi-site (i.e., LR fungicide) or a specific site (another HR) fungicide to a high-risk fungicide helps reduce the rate of selection against the fungicide(s) with the specific mode-of-action, 2) adding a partner fungicide while reducing the dose of the high-risk fungicide reduces the selection pressure for resistance development without compromising effective control; and 3) while there were few studies done, evidence suggests that mixing two high-risk fungicides is also a useful resistance management strategy. The authors also pointed out that due to the limited research in this area of tank mixes, the lack of these studies should be a warning against over interpreting the findings in their review (van den Bosch et al., 2014). Elderfield et al. (2018) in exploring the alternation or tank mixing of low- and high-risk fungicide programs on lifetime yield (e.g., use) of the high-risk fungicide, in other words, the time period before the high-risk fungicide was no longer economically effective, showed through empirical and theoretical modeling that lifetime yield may be different for different fungicide-pathosystems and that alternation or tank mixing may lead to longer lifetime yields (i.e., use). The authors, based on their evidence, suggest that mixtures of low and high risk fungicides will always be the best resistance management tactic when the objective is optimizing the lifetime yield (i.e., use) of the high-risk fungicide (Elderfield et al., 2018). Gisi et al. (2006) determined in the testing of resistance development in P. viticola (down mildew of grape) using a QoI (FRAC group 11) and protectant (LR) fungicide tank mix that increasing the dose of the non-QoI partner (LR) fungicide in the mixture resulted in reduced selection pressure. The authors also suggested that the choice of non-QoI (LR) fungicide tank-mix partner and its dosage can significantly affect the success of QoI resistance management strategies under practical conditions.

Parnell et al. (2007) suggested that in-field strategies, such as the alternation or tank mixing of fungicides, used to combat fungicide resistance development may be more useful through the restricted deployment of fungicides over large areas. Restrictions on fungicide use in this manner may be extremely beneficial in controlling and managing fungicide resistance development in pathogens such as Podosphaera xanthii (cucurbit powdery mildew) and Pseudoperonospora cubensis (cucurbit downy mildew) which spread over vast geographic areas (i.e., the east coast of the U.S.) each year. Research in the mid-Atlantic region of the U.S. has confirmed the presence of cucurbit powdery mildew populations resistant to FRAC codes 3 and 11 fungicides in recent years. This suggests that QoI- and/or DMI-resistant cucurbit powdery mildew populations could be disseminating up the east coast from the southeast region of the U.S. each production season. Importantly, fungicides in FRAC code 11 are still widely recommended and used in some southern tier states, whereas recommendations and use of FRAC code 11 fungicides for cucurbit powdery mildew control in the mid-Atlantic region have been mostly discontinued in recent years. In order to help combat fungicide resistance development issues such as this in the future, more collaboration between extension personnel from different regions must be done to help establish more defined fungicide resistance management guidelines for large geographic areas such as the south- and northeast regions of the US.

 Importance of risk management.

Because certain pesticide chemistries have specific MOA’s there is always a much greater chance for pests (e.g., pathogens, weeds, or insects) to develop resistance. For example, fungi which produce a vast amount of asexual inoculum (i.e. conidia), undergo multiple diseases cycles during a given production season (e.g., powdery and downy mildews), or fungi which have a high probability for sexual reproduction in a field population (e.g., Phytophthora capsici) often have a much greater chance for fungicide resistance development. Importantly, in controlling pathogens where there are but a few, HR fungicide chemistries available for use, selection pressure put on the pathogen may be increased through their overuse. Therefore, the lack of proper chemical rotations (i.e., pesticides with different modes-of-action) or improper tank mixes or rotations may have a dramatic effect on resistance development, especially if these high-risk pesticides are over used or used improperly according to the label.

The grouping of similar chemistries together by their modes-of-action (e.g., FRAC group) and the inclusion of resistance management guidelines on pesticide labels are designed to i) reduce the chances for resistance development and ii) help agricultural producers develop and follow resistance management programs. Although application restrictions and resistance management guidelines have been widely adopted by the chemical industry, the follow-through effects of such guidelines have been left solely to the individual applicator; or extension personnel or crop specialists who help train those applying agricultural pesticides. Jutsum et al. (1998) pointed out that the challenge was to develop fungicide resistance management strategies which were relevant to local production practices. In recent years, the use of FRAC, HRAC and IRAC codes has been widely included in state and regional vegetable commercial production recommendations and promoted and used by extension personnel and crop advisors as education and teaching tools in many production regions of the United States. Even with increased awareness and training, the proper use of these pesticides is ultimately placed upon the end-user (e.g., the farmer/applicator) to make sure that the pesticides are properly applied according to the label rate, its restrictions, and state and federal laws.

 Take home thoughts

There is still a lot to learn in the understanding of tank mixing and rotating HR and LR fungicides with each other, and the rotation of HR fungicides with different modes of action on a weekly basis. First, growers need to follow the label. The label is the law. Where appropriate, growers need to rotate HR fungicides with different modes of action (i.e., from different FRAC groups) as much as possible to limit the overuse of any one FRAC group during the production season. In general, tank mixing HR fungicides with LR fungicides will help reduce overall section pressure for resistance development to the HR fungicide. In crops, where there are but one or a few HR fungicides labeled for control of a specific disease, the use of the HR fungicide(s) needs to be done judiciously.

Author citations in parenthesis are from peer-reviewed journal publications.

Quick reviews of fungicide chemistries, FRAC groups, and fungicide resistance management

Did you know that first EBDC fungicide was registered for use in vegetable crops in 1964 followed by chlorothalonil in 1966. Historically speaking, the first New Jersey Vegetable Production Recommendations Guide was produced in 1969 and was only 33 pages long (it’s 502 pages now). Things have changed significantly over the past 55 years when it comes to pest management! For a quick review on fungicides, FRAC groups, and managing fungicide resistance development please click on the links below.

Using tank mixes and fungicide rotations and information on FRAC group 4, FRAC group 7, and FRAC group 3 and FRAC group 11 fungicides.

As a reminder, the new 2024-2025 Mid-Atlantic Commercial Vegetable Production Recommendations Guide can be purchased at most county offices and is also available for FREE on-line here!